It is actually an interesting database by itself. These are just the names from the 380 rows:
Name
15MpaRato, 15Mpedia, 4chan, Academic Torrents, Actipedia , Agent Exoplanet, Agora Voting, Aixada, Aka-Aki, Alaska Permanent Fund, AlcorEss, Amara, Amul, Android, antiX, Apache HTTP Server , Apache Lucene, Appropedia, Archive.org, Arduino, Articultores, Asylos, Athens Wireless Metropolitan Network, Auroville, Babele, Backdrop, Bajo el Asfalto está la Huerta (BAH), Barrapunto, Beevoz, berkshares, Betahaus, BeWelcome, Biomed Central, Bitcoin, Bitcomet , bitmessage, BitTorrent (protocol), Blablacar, Blender, BoardGameGeek, Booksprint, Booktype, Bottle, Buddy Backup, BurningMan, c-base, Calafou, Camden Collective, Car pooling, Catarse, CBPP Directory, Changify, Chaos Computer Club, Chiemgauer, CitiLab, CitizenSpeak, Citizinvestor, CiviCRM, Claroline, CleanWeb, ClickWorkers, Commedia - Community Media Association, Common Futures, Commotion, Community Forge, Contratados, Cooperativa Integral Catalana, Couchsurfing, Cowo, Coworking Wiki Project, CreativeMornings, Crisis Commons, Crowd Voice, Crowdcrafting, Crowdmap, CrowdtiltOpen , CS Seco, CSA La Tabacalera de Lavapiés, CyanogenMod, CycleStreets Photomap - cycle infrastructure examples from around the world, DatAnalysis15m, Debian, Diaspora*, Digital Social Innovation, Discourse, Distributed Proofreaders, DiyDrones, Django, DNAdigest, Drupal, Duolingo, Edgeryders, Elgg, elhacker.NET, Emule, Energypedia, Ensancha el Huerto, Eppela, Ethereum, Evergreen, EyeWire, Fab Academy, Fab Folk, Fab Lab Barcelona, Fab Lab International, Fairphone, Farmhack, Faroo, FcForum, FilmAffinity, Firefox OS, Flok Society, Flossmanuals, Forvo, Fossbox, Freecycle Network, FreedomBox, Freenet, Freenode, Freesound, Freicoin, Freifunk, Friendica , Funkfeuer, Future Everything, GeeXboX, Generatech, Gentoo, geocommons, GigaTribe, GIMP, Github, Gitorious, Give What You're Good At, Global Climate Monitor, Global Voices, gNewSense, GNOME, GNUnet, Gnutella2, Gossple, Goteo, Grindr, GROWL - training materials for degrowth, Guerrilla Translation, Guifi, H4ckademy, hackerspaces.org, HELibTech, Hitchwiki, Homeforhome, Hospitality Club, Howtopedia , Identi.ca, Identica/StatusNet, Impact Hub, Inaturalist, Indiegogo, IndieHub, Indymedia or Independent Media Center , Inferno, Internet Engineering Task Force (IETF), IOBY (In Our Back Yard), JabRef, Jamendo, Jelly, Jenkins, Jenuino, Joomla, Joost, Katuma.org, KDE, Kickstarter, Kopfschlag, Kune, Kuro5hin, La Casika, La Morada, La Piluka, Latamuda, Libelium, LibreOffice, Linux, LocalWiki, Loomio, Lorea, Makerplane, Makespace Madrid, Mapping the commons, Meipi, Menéame, Metalab, Metamaps, MetricsGrimoire, Micromappers, Mikorizal Software - Value Accounting System software community, MOB - Makers of Barcelona, Mobiluck, Moneda DEMOS, MOOCs, Moodle, Moon mapers, Moovit, Morpheus, Mozilla Foundation, myExperiment, n-1 (Lorea), Napster, Neighbor.ly, Nerdkits, Netduino, Netention for Node.JS, NetFPGA, Netsukuku, NextSpace, Ninux, Noisebridge, nolotiro.org, NordicDEi, NoseRub, NotCourierSans font, OASIS Open Standards Boady , Occupy Sandy Recovery , Ohloh, OhmyNews, OKF/ Open Knowledge Foundation, On the commons , One Community Global , One Laptop Per Child (OLPC), Ongoingworlds, Open Economy Log, Open Food Facts, Open Frame Works (OFW), Open Ministry, Open Source Ecology, Open source robotics Foundation, Open Street Maps, Open Structures (OS), OpenBSD, OpenELEC, OpenHatch, Openp2pdesign.org, OpenPlans, OpenROV, OpenRPS, OpenScholar, Openspending, Opensubtitles, OpenUDC, Opigno, OSP, OSVehicle, Ouishare, Ourproject, Overnet, ownCloud, Oxcars, P2P Lab, P2P Wikisprint, P2P-Next, Panopticon, patients likeme, Patio Maravillas, Peer to peer University (P2PU), Performance Space, PHP-Nuke, phpMyAdmin, Pillku, Piwik, PLUG (PLay Ubiquitous Games), Poligrafia, Poplus , Prism Break, Project Gutenberg (PG), Project Madurai, Propongo, Protei, Proxecto Derriba, Public Lab, Public Library of Science, QScience, R , Radio Almenara, Radio ELA, Rate Your Music , Red Ciudadana. Partido X, Red SOStenible, Remix The Commons, Replicant, RepRap Project, Riseup , Ruby on Rails, Rubyforge, SAFARI (Services Ad-hoc/Filaires), Safecast, Sage , Sakai, Sayit, School of data, Seattle Community Network (SCN), Sensorica, SETI@home, Seventeen or Bust, Sharing Backyards, SikhiWiki, SinDominio, Skype, Slapos, Slashdot, Smartcitizen.me, Social Stream, SocialCompare, Society One, Soinumapa, Som Energia Platform, Sourcefabric, SourceForge, Spacehive, Spain Gamers, Spam Attacks, Stack Exchange Network, Steam workshop, StencylForge, Symfony, Synfig Studio, TAG Talent Garden, TechHub, Texmaker, The Common House, The Cube, The Cutting Edge - Nafeez Ahmed's Blog, The FairCoin, The Global Lives Project , The Guardian Project , The Internet Engineering Task Force (IETF), The Open University, The Pirate Bay, The Standby task force, Thingspeak, Timebank.cc, Tizen, Tor, Transhumance, Tribler, Twine, Ubuntu, Unhosted, Unybook, Usenet, Ushahidi, Ututo, Vuze , Waze, Wikidata, WikiEducator, Wikihouse, Wikihow, Wikiloc, Wikimapia, Wikinews, Wikipedia, Wikiprogress, Wikisaber, Wikisigns - Sign language dictionaries of the world, Wikispeed, Wikitravel, Wikiversity, Wikivoyage, Wireshark, wlan slovenija, WordPress, World Wide Web Consortium (W3C), Writing Commons , Wuala, X.net, Xfce, Your Priorities , Zipcar, Zooniverse , Zotero
EDIT: sorted a-z